
Displaying 1 - 114 of 114
Award Type | Award Year | PI Name(s) | Institution(s) | Project | Status |
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U01 | 2020 |
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Single-cell and imaging data integration software to spatially resolve the tumor microenvironment | Active |
U24 | 2020 |
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Advanced development of the Cancer Dependency Map portal (DepMap.org) | Active |
U24 | 2020 |
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Patient Derived Cancer Model (PDCM) Finder | Active |
U01 | 2020 |
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Technology for efficient simulation of cancer cell transport | Active |
R21 | 2020 |
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PRISTINE: Pre-cancer histology identification of Endobronchial biopsies using deep learning | Active |
R21 | 2020 |
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Cancer-specific gene set testing | Active |
R01 | 2020 |
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Integrative Analyses of Saturation CRISPR Protein Scan | Active |
U24 | 2020 |
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Development of an Open-Source Preclinical Imaging Informatics Platform for Cancer Research | Active |
UE5 | 2020 |
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Scalable multi-mode education to increase use of ITCR tools by diverse analysts | Active |
U24 | 2020 |
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Advancing Our Understanding of Cancer and the Human Microbiome with QIIME 2 | Active |
U24 | 2020 |
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Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution | Active |
U01 | 2020 |
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RadxTools for Assessing Tumor Treatment Response on Imaging | Active |
U24 | 2020 |
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Cancer Deep Phenotype Extraction from Electronic Medical Records | Active |
U24 | 2020 |
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Advancing Method Benchmarking and Data Sharing Through Crowd-Sourced Competitions in Cancer Research | Active |
R21 | 2020 |
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Inference of Tumor Growth Dynamics Using Genomic Data | Active |
U24 | 2020 |
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GenePattern and GenePattern Notebook: Integrative 'Omic Analysis for Cancer Research | Active |
U01 | 2020 |
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Informatics Tools for Identification, Prioritization, and Clinical Application of Neoantigens | Active |
R21 | 2020 |
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A Computational Method to Calculate the Radiation Dose to Circulating Lymphocytes | Active |
R21 | 2019 |
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A Statistical Framework to Systematically Characterize Cancer Driver Mutations in Noncoding Genomic Regions | Active |
R21 | 2019 |
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Semi-supervised Algorithms for Risk Assessment with Noisy EHR Data | Active |
R21 | 2019 |
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Data-Driven QSP Software for Personalized Colon Cancer Treatment | Active |
U01 | 2019 |
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Computational Pathology Software for Integrative Cancer Research with Three-Dimensional Digital Slides | Active |
U01 | 2019 |
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The Federated Tumor Segmentation (FeTS) Platform: An Intuitive Tool Facilitating Secure Multi-Institutional Collaboration | Active |
U24 | 2019 |
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WebMeV: A Robust Platform for Intuitive Genomic Data Analysis | Active |
U01 | 2019 |
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Eliminating Variants of Uncertain Significance in BRCA1, BRCA2 and Beyond | Active |
U01 | 2019 |
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Distributed Learning of Deep Learning Models for Cancer Research | Active |
R21 | 2019 |
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Enhanced Deconvolution and Prediction of Mutational Signatures | Active |
U01 | 2019 |
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Informatics Resources for Liquid Biopsy Research | Active |
R21 | 2019 |
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Conservation and Functional-Characterization of Tumor Methylation Sites | Active |
R21 | 2019 |
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Personalized Dosimetry for Liver Cancer Radioembolization Using Fluid Dynamics Simulation | Active |
U24 | 2019 |
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Developing Informatics Technologies to Model Cancer Gene Regulation | Active |
U01 | 2019 |
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HistoTools: A Suite of Digital Pathology Tools for Quality Control, Annotation and Dataset Identification | Active |
R21 | 2019 |
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Development and Dissemination of KiNet: A Novel Imaging Informatics Tool for Gastrointestinal and Pancreatic Neuroendocrine Tumors | Active |
U24 | 2019 |
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Standardized and Genome-Wide Clinical Interpretation of Complex Genotypes for Cancer Precision Medicine | Active |
U01 | 2019 |
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Open-Access X-Ray and CT Simulation Toolkit for Research in Cancer Imaging and Dosimetry | Active |
R21 | 2019 |
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STAN-CT: Standardization and Normalization of CT images for Lung Cancer Patients | Active |
U24 | 2018 |
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Supporting and Evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for Cancer Research | Active |
R21 | 2018 |
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Inferring Kinase Activity Profiles from Phosphoproteomic Data | Active |
R21 | 2018 |
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Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies | Active |
U01 | 2018 |
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Network Analysis for a Data-Driven Approach to Cancer Care | Active |
U24 | 2018 |
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A Federated Galaxy for user-friendly large-scale cancer genomics research | Active |
R21 | 2018 |
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Bayesian learning algorithms for identifying and classifying heterogeneity of cell types in variety of solid tumors | Active |
U01 | 2018 |
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Bioinformatics Technology to Characterize Tumor Infiltrating Immune Repertoires | Active |
U01 | 2018 |
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A Unified Machine Learning Package for Cancer Diagnosis | Active |
U01 | 2018 |
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Tools for annotating mutations in the 3D cancer genome | Active |
U24 | 2018 |
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Detection of somatic, subclonal and mosaic CNVs from sequencing | Active |
U24 | 2018 |
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The TOPAS Tool for Particle Simulation, a Monte Carlo Simulation Tool for Physics, Biology and Clinical Research | Active |
U01 | 2018 |
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Informatics Tools for Quantitative Digital Pathology Profiling and Integrated Prognostic Modeling | Active |
R21 | 2018 |
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Proteomic-based integrated subject-specific networks in cancer | Active |
R21 | 2018 |
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An Ontology-driven Faceted Query Engine for the Kentucky Cancer Registry | Active |
U01 | 2017 |
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Accelerating Cancer Genomics with Cloud-Scale Bioconductor | Active |
U24 | 2017 |
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Advanced Development and Dissemination of EMERSE for Cancer Phenotyping from Medical Records | Active |
U01 | 2017 |
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Integration of Comprehensive Cancer Mutation and Expression-Associated Data for Biomarker Evaluation and Discovery | Active |
U24 | 2017 |
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TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision Medicine | Active |
R01 | 2017 |
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Database and Tools for Functional Inference and Mechanistic Insight into Somatic Cancer Mutations | Active |
U24 | 2017 |
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Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data | Active |
U01 | 2017 |
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An interactive analysis toolkit for single cell RNA-seq in cancer research | Active |
U24 | 2017 |
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Scalable Clinical Decision Support for Individualized Cancer Risk Management | Active |
U24 | 2017 |
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Building Protected Data Sharing Networks to Advance Cancer Risk Assessment and Treatment | Active |
U24 | 2017 |
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The cBioPortal for Cancer Genomics | Active |
Contract | 2017 |
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Cloud-Hosted Clinical Trial Imaging Assessment and Workflow Management System | Active |
U24 | 2016 |
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Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics | Active |
U01 | 2016 |
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Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer | Active |
U24 | 2016 |
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The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research | Active |
U24 | 2016 |
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Monitoring Tumor Subclonal Heterogeneity Over Time and Space | Active |
U24 | 2016 |
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The Cancer Proteome Atlas, TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data | Active |
U24 | 2016 |
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A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers | Active |
U24 | 2016 |
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Integrative Imaging Informatics for Cancer Research | Active |
U24 | 2016 |
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The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts | Active |
U24 | 2016 |
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Informatics Tools for High-Throughput Analysis of Cancer Mutations | Active |
U24 | 2015 |
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GenePattern Notebooks for Cancer Research | Active |
U24 | 2015 |
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Quantitative Radiomics System Decoding the Tumor Phenotype | Active |
U24 | 2015 |
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Pathology Image Informatics Platform for Visualization, Analysis and Management | Active |
U24 | 2015 |
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Extensible Open-Source Zero-Footprint Web Viewer for Oncologic Imaging Research | Active |
U24 | 2015 |
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Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer | Active |
U24 | 2015 |
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Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data | Active |
U24 | 2014 |
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Tools to Analyze Morphology and Spatially Mapped Molecular Data | Active |
U24 | 2014 |
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Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor | Active |
U24 | 2014 |
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Cancer Deep Phenotyping Extraction from Electronic Medical Records | Active |
U24 | 2014 |
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NDEx - the Network Data Exchange, A Network Commons for Biologists | Active |
U24 | 2013 |
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Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser | Active |
U24 | 2013 |
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Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer | Active |
R21 | 2018 |
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Somatic variant calling and phasing using colored de Bruijn graphs in heterogeneous tumors | Complete |
R21 | 2018 |
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Predicting the Presence of Clinically Significant Prostate Cancer using Multiparametric MRI and MR-US Fusion Biopsy | Complete |
R21 | 2017 |
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A network-based approach for personalized treatment of Multiple Myeloma | Complete |
R21 | 2017 |
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CGDnet: Cancer Gene Drug Network: Using patient-specific drug-gene networks for recommending targeted cancer therapies | Complete |
R21 | 2017 |
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Integrative Genomic Framework for Dissecting Regulatory Mechanisms Underlying Hepatocellular Carcinoma | Complete |
Contract | 2017 |
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FDA Compliant Imaging Informatics for Cancer Research | Complete |
R21 | 2016 |
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Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy | Complete |
R21 | 2016 |
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Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes | Complete |
U01 | 2016 |
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Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images | Complete |
U01 | 2016 |
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Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq | Complete |
R21 | 2016 |
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Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy | Complete |
U01 | 2015 |
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Open Source Diffusion MRI Technology for Brain Cancer Research | Complete |
U01 | 2015 |
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Informatics Links between Histological Features and Genetics in Cancer | Complete |
U01 | 2015 |
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Computational Framework for Single-Cell Genomics of Tumors | Complete |
U24 | 2015 |
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Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer | Complete |
U24 | 2014 |
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Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery | Complete |
R01 | 2014 |
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Integrative Epigenomic/Genomic Profiling and Biomarker Discovery in HPV+ and HPV- | Complete |
U01 | 2014 |
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caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements | Complete |
U01 | 2014 |
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EMR Adverse Drug Event Detection for Pharmacovigilance | Complete |
U01 | 2014 |
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OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer | Complete |
U01 | 2014 |
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Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets | Complete |
U01 | 2014 |
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Interactive Informatics Resource for Research-driven Cancer Proteomics | Complete |
U01 | 2013 |
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Informatics Tools for High-Throughput Analysis of Cancer Mutations | Complete |
U01 | 2013 |
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Informatics to Enable Routine Personalized Cancer Therapy | Complete |
U24 | 2013 |
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Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research | Complete |
R01 | 2013 |
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ESCE: Discovering Molecular Processes | Complete |
U24 | 2013 |
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Quantitative Image Informatics for Cancer Research (QIICR) | Complete |
R01 | 2013 |
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Cloud-Computer-Aided Diagnostic Imaging Decision Support System | Complete |
R01 | 2013 |
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Interpreting Massive Genomic Data Sets via Summarization | Complete |
U01 | 2013 |
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Developing Informatics Technologies to Model Cancer | Complete |
U01 | 2011 |
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MeV: Software for Next Generation Genomic Data Analysis | Complete |
R01 | 2002 |
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Electronic Access to Mouse Tumor Data | Complete |