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Award Type	Award Year	PI Name(s)	Institution(s)	Project
R01	2014	Laura Rozek Maureen Sartor	University of Michigan	Integrative Epigenomic/Genomic Profiling and Biomarker Discovery in HPV+ and HPV-
R01	2013	Joshua Stuart	University of California, Santa Cruz	ESCE: Discovering Molecular Processes
R01	2013	Hiroyuki Yoshida	Massachusetts General Hospital	Cloud-Computer-Aided Diagnostic Imaging Decision Support System
R01	2013	William Noble	University of Washington	Interpreting Massive Genomic Data Sets via Summarization
R01	2002	Janan Eppig Carol Bult	Jackson Laboratory	Electronic Access to Mouse Tumor Data
R21	2017	Samir Parekh	Icahn School of Medicine at Mount Sinai	A network-based approach for personalized treatment of Multiple Myeloma
R21	2017	Simina Boca	Georgetown University	Cancer Gene Drug Network: Using patient-specific drug-gene networks for recommending targeted cancer therapies
R21	2017	Nathalie Pochet	Brigham and Women's Hospital	Integrative genomic framework for dissecting regulatory mechanisms underlying hepatocellular carcinoma
R21	2016	Xiaodong Wu	University of Iowa	Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy
R21	2016	Lydia Kavraki Gregory Lizee	Rice University	Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy
R21	2016	Dongjun Chung Linda Kelemen	Medical University of South Carolina	Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes
U01	2017	William Evan Johnson	Boston University	An interactive analysis toolkit for single cell RNA-seq in cancer research
U01	2017	Vincent Carey	Brigham and Women's Hospital	Accelerating Cancer Genomics with Cloud-Scale Bioconductor
U01	2017	Daniel Crichton Raja Mazumder	Jet Propulsion Laboratory George Washington University	Integration of comprehensive cancer mutation and expression-associated data for biomarker evaluation and discovery
U01	2016	Obi Griffith	Washington University in St. Louis	Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer
U01	2016	Srinivas Chakra Chennubhotla Daryl Sarachan Lansing Taylor	University of Pittsburgh	Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images
U01	2016	Xinshu Grace Xiao	University of California, Los Angeles	Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq
U01	2015	Lauren Jean O'Donnell	Harvard Medical School	Open Source Diffusion MRI Technology for Brain Cancer Research
U01	2015	Huang Kun	Ohio State University	Informatics Links between Histological Features and Genetics in Cancer
U01	2015	Michael Wigler Alexander Krasnitz	Cold Spring Harbor Laboratory	Computational Framework for Single-Cell Genomics of Tumors
U01	2014	Guoqian Jiang	Mayo Clinic - Rochester, Minnesota	caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements
U01	2014	Hong Yu	University of Massachusetts Medical School	EMR Adverse Drug Event Detection for Pharmacovigilance
U01	2014	Jingshan Huang	University of South Alabama	OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer
U01	2014	Benjamin Berman	Cedars-Sinai Medical Center	Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets
U01	2014	Bobbie-Jo Mary Webb-Robertson	Pacific Northwest National Laboratory	Interactive Informatics Resource for Research-driven Cancer Proteomics
U01	2013	Shirley Liu	Dana-Farber Cancer Institute	Developing Informatics Technologies to Model Cancer
U01	2013	Rachel Karchin	Johns Hopkins University	Informatics Tools for High-Throughput Analysis of Cancer Mutations
U01	2013	Elmer Bernstam Funda Meric-Bernstam	University of Texas MD Anderson Cancer Center University of Texas Health Sci. Center, Houston	Informatics to Enable Routine Personalized Cancer Therapy
U01	2011	John Quackenbush	Dana-Farber Cancer Institute	MeV: Software for Next Generation Genomic Data Analysis
U24	2017	Ian Foster	University of Chicago	Building Protected Data Sharing Networks to Advance Cancer Risk Assessment and Treatment
U24	2017	Ian Holmes Lincoln Stein	University of California, Berkeley Ontario Institute for Cancer Research	Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data
U24	2017	Trey Ideker	University of California, San Diego	NDEx - the Network Data Exchange a Network Commons for Biologists
U24	2017	Guilherme Del Fiol Kensaku Kawamoto	University of Utah	Scalable Clinical Decision Support for Individualized Cancer Risk Management
U24	2017	Nikolaus Schultz Ethan Cerami Chris Sander	Sloan Kettering Institute for Cancer Research	The cBioPortal for Cancer Genomics
U24	2016	Joshua Denny Hua Xu Ping Yang	Vanderbilt University University of Texas Health Sci. Center, Houston Mayo Clinic - Jacksonville, Florida	Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics
U24	2016	Jill Mesirov	University of California, San Diego	The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research
U24	2016	Gabor Marth Aaron Quinlan	University of Utah	Monitoring Tumor Subclonal Heterogeneity Over Time and Space
U24	2016	Han Liang Gordon Mills	University of Texas MD Anderson Cancer Center	The Cancer Proteome Atlas, TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data
U24	2016	Timothy Griffin	University of Minnesota	A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers
U24	2016	Daniel Marcus Richard Wahl	Washington University in St. Louis	Integrative Imaging Informatics for Cancer Research
U24	2016	Helen Parkinson	European Molecular Biology Laboratory	The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts
U24	2016	Rachel Karchin	Johns Hopkins University	Informatics Tools for High-Throughput Analysis of Cancer Mutations
U24	2015	Anant Madabhushi Metin Nafi Gurcan Anne Martel	Case Western Reserve University Ohio State University University of Toronto	Pathology Image Informatics Platform for Visualization, Analysis and Management
U24	2015	Gordon Harris	Harvard Medical School	Extensible Open-Source Zero-Footprint Web Viewer for Oncologic Imaging Research
U24	2015	Christos Davatzikos Despina Kontos	University of Pennsylvania	Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer
U24	2015	John Weinstein Bradley Broom	University of Texas MD Anderson Cancer Center	Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data
U24	2015	David Andrew Gutman Lee Cooper	Emory University	Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer
U24	2015	Jill Mesirov	Broad Institute	GenePattern Notebooks for Cancer Research
U24	2015	John Quackenbush Hugo Aerts	Dana-Farber Cancer Institute	Quantitative Radiomics System Decoding the Tumor Phenotype
U24	2014	Bruce Rosen Jayashree Kalpathy-Cramer	Massachusetts General Hospital	Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery
U24	2014	Joel Saltz	Stony Brook University	Tools to Analyze Morphology and Spatially Mapped Molecular Data
U24	2014	Martin Morgan	Roswell Park Cancer Institute	Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor
U24	2014	Guergana Savova Rebecca Crowley Jacobson	Boston Children's Hospital University of Pittsburgh	Cancer Deep Phenotyping Extraction from Electronic Medical Records
U24	2014	Trey Ideker	University of California, San Diego	NDEx - the Network Data Exchange, A Network Commons for Biologists
U24	2013	Rebecca Crowley Jacobson	University of Pittsburgh	Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
U24	2013	David Haussler	University of California, Santa Cruz	Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser
U24	2013	Aviv Regev	Broad Institute	Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer
U24	2013	Ron Kikinis Andrey Fedorov	Brigham and Women's Hospital Harvard Medical School	Quantitative Image Informatics for Cancer Research (QIICR)

Boston Children's Hospital
Boston University
Brigham and Women's Hospital
Broad Institute
Case Western Reserve University
Cedars-Sinai Medical Center
Cold Spring Harbor Laboratory
Dana-Farber Cancer Institute
Emory University
European Molecular Biology Laboratory
Fred Hutchinson Cancer Research Center
George Washington University
Georgetown University
Harvard Medical School
Icahn School of Medicine at Mount Sinai
Jackson Laboratory
Jet Propulsion Laboratory
Johns Hopkins University
Massachusetts General Hospital
Mayo Clinic - Jacksonville, Florida
Mayo Clinic - Rochester, Minnesota
Mayo Clinic - Scottsdale/Phoenix, Arizona
Medical University of South Carolina
Ohio State University
Ontario Institute for Cancer Research
Pacific Northwest National Laboratory
Rice University
Roswell Park Cancer Institute
Sloan Kettering Institute for Cancer Research
Stony Brook University
University of California, Berkeley
University of California, Los Angeles
University of California, San Diego
University of California, Santa Cruz
University of Chicago
University of Iowa
University of Massachusetts Medical School
University of Michigan
University of Minnesota
University of Pennsylvania
University of Pittsburgh
University of South Alabama
University of Texas Health Sci. Center, Houston
University of Texas Health Sci. Center, San Antonio
University of Texas MD Anderson Cancer Center
University of Toronto
University of Utah
University of Washington
Vanderbilt University
Washington University in St. Louis

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Funded Projects