Funded Projects

Displaying 1 - 76 of 76
Award Type Award Year PI Name(s) Institution(s) Project
U01 2018
  • Kai Tan
  • Children's Hospital of Philadelphia
Tools for annotating mutations in the 3D cancer genome
U24 2018
  • Alexej Abyzov
  • Mayo Clinic Rochester
Detection of somatic, subclonal and mosaic CNVs from sequencing
U24 2018
  • Bruce Faddegon
  • University of California, San Francisco
The TOPAS Tool for Particle Simulation, a Monte Carlo Simulation Tool for Physics, Biology and Clinical Research
U01 2018
  • Lee Cooper
  • Emory University
Informatics Tools for Quantitative Digital Pathology Profiling and Integrated Prognostic Modeling
R21 2018
  • Min Jin Ha
  • Veerabhadran Baladandayuthapani
  • University of Texas MD Anderson Cancer Center
  • University of Michigan
Proteomic-based integrated subject-specific networks in cancer
R21 2018
  • Corey W. Arnold
  • University of California, Los Angeles
Predicting the Presence of Clinically Significant Prostate Cancer using Multiparametric MRI and MR-US Fusion Biopsy
R21 2018
  • Guo-Qiang Zhang
  • Licong Cui
  • University of Kentucky Research Foundation
  • University of Kentucky Research Foundation
An Ontology-driven Faceted Query Engine for the Kentucky Cancer Registry
U24 2018
  • Jill Mesirov
  • University of California, San Diego
Supporting and Evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for Cancer Research
R21 2018
  • Kristen Naegle
  • Washington University
Inferring Kinase Activity Profiles from Phosphoproteomic Data
R21 2018
  • Li-Xuan Qin
  • Sloan Kettering Institute for Cancer Research
Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies
U01 2018
  • Jeremy Warner
  • Vanderbilt University Medical Center
Network Analysis for a Data-Driven Approach to Cancer Care
U24 2018
  • Jeremy Goecks
  • James Taylor
  • Oregon Health and Science University
  • Johns Hopkins University
A Federated Galaxy for user-friendly large-scale cancer genomics research
R21 2018
  • Giuseppe Narzisi
  • New York Genome Center
Somatic variant calling and phasing using colored de Bruijn graphs in heterogeneous tumors
U01 2018
  • Xiaole Shirley Liu
  • Dana-Farber Cancer Institute
Bioinformatics Technology to Characterize Tumor Infiltrating Immune Repertoires
U24 2017
  • Ian Holmes
  • Lincoln Stein
  • University of California, Berkeley
  • Ontario Institute for Cancer Research
Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data
U01 2017
  • William Evan Johnson
  • Boston University
An interactive analysis toolkit for single cell RNA-seq in cancer research
U24 2017
  • Guilherme Del Fiol
  • Kensaku Kawamoto
  • University of Utah
Scalable Clinical Decision Support for Individualized Cancer Risk Management
R21 2017
  • Nathalie Pochet
  • Brigham and Women's Hospital
Integrative Genomic Framework for Dissecting Regulatory Mechanisms Underlying Hepatocellular Carcinoma
U24 2017
  • Ian Foster
  • University of Chicago
Building Protected Data Sharing Networks to Advance Cancer Risk Assessment and Treatment
Contract 2017
  • Timothy Olsen
  • Daniel Marcus
  • Radiologic, Inc.
  • Washington University in St. Louis
FDA Compliant Imaging Informatics for Cancer Research
U24 2017
  • Nikolaus Schultz
  • Ethan Cerami
  • Chris Sander
  • Sloan Kettering Institute for Cancer Research
The cBioPortal for Cancer Genomics
Contract 2017
  • Trinity Urban
  • Gordon Harris
  • Precision Imaging Metrics
  • Harvard Medical School
Cloud-Hosted Clinical Trial Imaging Assessment and Workflow Management System
R21 2017
  • Samir Parekh
  • Icahn School of Medicine at Mount Sinai
A network-based approach for personalized treatment of Multiple Myeloma
R21 2017
  • Simina Boca
  • Georgetown University
CGDnet: Cancer Gene Drug Network: Using patient-specific drug-gene networks for recommending targeted cancer therapies
U01 2017
  • Vincent Carey
  • Brigham and Women's Hospital
Accelerating Cancer Genomics with Cloud-Scale Bioconductor
U24 2017
  • David Hanauer
  • University of Michigan
Advanced Development and Dissemination of EMERSE for Cancer Phenotyping from Medical Records
U01 2017
  • Daniel Crichton
  • Raja Mazumder
  • Jet Propulsion Laboratory
  • George Washington University
Integration of Comprehensive Cancer Mutation and Expression-Associated Data for Biomarker Evaluation and Discovery
U24 2017
  • Fred Prior
  • Joel Saltz
  • Ashish Sharma
  • University of Arkansas
  • Stony Brook University
  • Emory University
TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision Medicine
R01 2017
  • Jie Liang
  • Yan-Yuan Tseng
  • University of Illinois at Chicago
  • Wayne State University
Database and Tools for Functional Inference and Mechanistic Insight into Somatic Cancer Mutations
U24 2016
  • Timothy Griffin
  • University of Minnesota
A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers
U24 2016
  • Daniel Marcus
  • Richard Wahl
  • Washington University in St. Louis
Integrative Imaging Informatics for Cancer Research
U24 2016
  • Helen Parkinson
  • European Molecular Biology Laboratory
The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts
U24 2016
  • Rachel Karchin
  • Johns Hopkins University
Informatics Tools for High-Throughput Analysis of Cancer Mutations
R21 2016
  • Xiaodong Wu
  • University of Iowa
Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy
R21 2016
  • Lydia Kavraki
  • Gregory Lizee
  • Rice University
Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy
R21 2016
  • Dongjun Chung
  • Linda Kelemen
  • Medical University of South Carolina
Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes
U24 2016
  • Hua Xu
  • Jeremy Warner
  • Ping Yang
  • University of Texas Health Sci. Center, Houston
  • Vanderbilt University
  • Mayo Clinic - Jacksonville, Florida
Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics
U01 2016
  • Obi Griffith
  • Washington University in St. Louis
Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer
U24 2016
  • Jill Mesirov
  • University of California, San Diego
The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research
U01 2016
  • Srinivas Chakra Chennubhotla
  • Daryl Sarachan
  • Lansing Taylor
  • University of Pittsburgh
Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images
U24 2016
  • Gabor Marth
  • Aaron Quinlan
  • University of Utah
Monitoring Tumor Subclonal Heterogeneity Over Time and Space
U01 2016
  • Xinshu Grace Xiao
  • University of California, Los Angeles
Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq
U24 2016
  • Han Liang
  • Gordon Mills
  • University of Texas MD Anderson Cancer Center
The Cancer Proteome Atlas, TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data
U01 2015
  • Lauren Jean O'Donnell
  • Harvard Medical School
Open Source Diffusion MRI Technology for Brain Cancer Research
U01 2015
  • Kun Huang
  • Ohio State University
Informatics Links between Histological Features and Genetics in Cancer
U01 2015
  • Michael Wigler
  • Alexander Krasnitz
  • Cold Spring Harbor Laboratory
Computational Framework for Single-Cell Genomics of Tumors
U24 2015
  • Anant Madabhushi
  • Metin Nafi Gurcan
  • Anne Martel
  • Case Western Reserve University
  • Ohio State University
  • University of Toronto
Pathology Image Informatics Platform for Visualization, Analysis and Management
U24 2015
  • Gordon Harris
  • Harvard Medical School
Extensible Open-Source Zero-Footprint Web Viewer for Oncologic Imaging Research
U24 2015
  • Christos Davatzikos
  • Despina Kontos
  • University of Pennsylvania
Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer
U24 2015
  • John Weinstein
  • Bradley Broom
  • University of Texas MD Anderson Cancer Center
Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data
U24 2015
  • David Andrew Gutman
  • Lee Cooper
  • Emory University
Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer
U24 2015
  • Jill Mesirov
  • University of California, San Diego
GenePattern Notebooks for Cancer Research
U24 2015
  • John Quackenbush
  • Hugo Aerts
  • Dana-Farber Cancer Institute
Quantitative Radiomics System Decoding the Tumor Phenotype
R01 2014
  • Laura Rozek
  • Maureen Sartor
  • University of Michigan
Integrative Epigenomic/Genomic Profiling and Biomarker Discovery in HPV+ and HPV-
U01 2014
  • Guoqian Jiang
  • Mayo Clinic - Rochester, Minnesota
caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements
U01 2014
  • Hong Yu
  • University of Massachusetts Medical School
EMR Adverse Drug Event Detection for Pharmacovigilance
U01 2014
  • Jingshan Huang
  • University of South Alabama
OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer
U01 2014
  • Benjamin Berman
  • Cedars-Sinai Medical Center
Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets
U01 2014
  • Bobbie-Jo Mary Webb-Robertson
  • Pacific Northwest National Laboratory
Interactive Informatics Resource for Research-driven Cancer Proteomics
U24 2014
  • Bruce Rosen
  • Jayashree Kalpathy-Cramer
  • Massachusetts General Hospital
Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery
U24 2014
  • Joel Saltz
  • Stony Brook University
Tools to Analyze Morphology and Spatially Mapped Molecular Data
U24 2014
  • Martin Morgan
  • Roswell Park Cancer Institute
Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor
U24 2014
  • Guergana Savova
  • Boston Children's Hospital
  • University of Pittsburgh
Cancer Deep Phenotyping Extraction from Electronic Medical Records
U24 2014
  • Trey Ideker
  • University of California, San Diego
NDEx - the Network Data Exchange, A Network Commons for Biologists
U24 2013
  • Michael Becich
  • University of Pittsburgh
Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
U24 2013
  • David Haussler
  • University of California, Santa Cruz
Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser
U24 2013
  • Aviv Regev
  • Broad Institute
Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer
R01 2013
  • Joshua Stuart
  • University of California, Santa Cruz
ESCE: Discovering Molecular Processes
U24 2013
  • Ron Kikinis
  • Andrey Fedorov
  • Brigham and Women's Hospital
  • Harvard Medical School
Quantitative Image Informatics for Cancer Research (QIICR)
R01 2013
  • Hiroyuki Yoshida
  • Massachusetts General Hospital
Cloud-Computer-Aided Diagnostic Imaging Decision Support System
R01 2013
  • William Noble
  • University of Washington
Interpreting Massive Genomic Data Sets via Summarization
U01 2013
  • Shirley Liu
  • Dana-Farber Cancer Institute
Developing Informatics Technologies to Model Cancer
U01 2013
  • Rachel Karchin
  • Johns Hopkins University
Informatics Tools for High-Throughput Analysis of Cancer Mutations
U01 2013
  • Elmer Bernstam
  • Funda Meric-Bernstam
  • University of Texas MD Anderson Cancer Center
  • University of Texas Health Sci. Center, Houston
Informatics to Enable Routine Personalized Cancer Therapy
U01 2011
  • John Quackenbush
  • Dana-Farber Cancer Institute
MeV: Software for Next Generation Genomic Data Analysis
R01 2002
  • Janan Eppig
  • Carol Bult
  • Jackson Laboratory
Electronic Access to Mouse Tumor Data