|
U01 |
2018 |
|
- Children's Hospital of Philadelphia
|
Tools for annotating mutations in the 3D cancer genome |
|
U24 |
2018 |
|
|
Detection of somatic, subclonal and mosaic CNVs from sequencing |
|
U24 |
2018 |
|
- University of California, San Francisco
|
The TOPAS Tool for Particle Simulation, a Monte Carlo Simulation Tool for Physics, Biology and Clinical Research |
|
U01 |
2018 |
|
|
Informatics Tools for Quantitative Digital Pathology Profiling and Integrated Prognostic Modeling |
|
R21 |
2018 |
- Min Jin Ha
- Veerabhadran Baladandayuthapani
|
- University of Texas MD Anderson Cancer Center
- University of Michigan
|
Proteomic-based integrated subject-specific networks in cancer |
|
R21 |
2018 |
|
- University of California, Los Angeles
|
Predicting the Presence of Clinically Significant Prostate Cancer using Multiparametric MRI and MR-US Fusion Biopsy |
|
R21 |
2018 |
- Guo-Qiang Zhang
- Licong Cui
|
- University of Kentucky Research Foundation
- University of Kentucky Research Foundation
|
An Ontology-driven Faceted Query Engine for the Kentucky Cancer Registry |
|
U24 |
2018 |
|
- University of California, San Diego
|
Supporting and Evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for Cancer Research |
|
R21 |
2018 |
|
|
Inferring Kinase Activity Profiles from Phosphoproteomic Data |
|
R21 |
2018 |
|
- Sloan Kettering Institute for Cancer Research
|
Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies |
|
U01 |
2018 |
|
- Vanderbilt University Medical Center
|
Network Analysis for a Data-Driven Approach to Cancer Care |
|
U24 |
2018 |
- Jeremy Goecks
- James Taylor
|
- Oregon Health and Science University
- Johns Hopkins University
|
A Federated Galaxy for user-friendly large-scale cancer genomics research |
|
R21 |
2018 |
|
|
Somatic variant calling and phasing using colored de Bruijn graphs in heterogeneous tumors |
|
U01 |
2018 |
|
- Dana-Farber Cancer Institute
|
Bioinformatics Technology to Characterize Tumor Infiltrating Immune Repertoires |
|
U24 |
2017 |
|
- University of California, Berkeley
- Ontario Institute for Cancer Research
|
Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data |
|
U01 |
2017 |
|
|
An interactive analysis toolkit for single cell RNA-seq in cancer research |
|
U24 |
2017 |
- Guilherme Del Fiol
- Kensaku Kawamoto
|
|
Scalable Clinical Decision Support for Individualized Cancer Risk Management |
|
R21 |
2017 |
|
- Brigham and Women's Hospital
|
Integrative Genomic Framework for Dissecting Regulatory Mechanisms Underlying Hepatocellular Carcinoma |
|
U24 |
2017 |
|
|
Building Protected Data Sharing Networks to Advance Cancer Risk Assessment and Treatment |
|
Contract |
2017 |
- Timothy Olsen
- Daniel Marcus
|
- Radiologic, Inc.
- Washington University in St. Louis
|
FDA Compliant Imaging Informatics for Cancer Research |
|
U24 |
2017 |
- Nikolaus Schultz
- Ethan Cerami
- Chris Sander
|
- Sloan Kettering Institute for Cancer Research
|
The cBioPortal for Cancer Genomics |
|
Contract |
2017 |
- Trinity Urban
- Gordon Harris
|
- Precision Imaging Metrics
- Harvard Medical School
|
Cloud-Hosted Clinical Trial Imaging Assessment and Workflow Management System |
|
R21 |
2017 |
|
- Icahn School of Medicine at Mount Sinai
|
A network-based approach for personalized treatment of Multiple Myeloma |
|
R21 |
2017 |
|
|
CGDnet: Cancer Gene Drug Network: Using patient-specific drug-gene networks for recommending targeted cancer therapies |
|
U01 |
2017 |
|
- Brigham and Women's Hospital
|
Accelerating Cancer Genomics with Cloud-Scale Bioconductor |
|
U24 |
2017 |
|
|
Advanced Development and Dissemination of EMERSE for Cancer Phenotyping from Medical Records |
|
U01 |
2017 |
- Daniel Crichton
- Raja Mazumder
|
- Jet Propulsion Laboratory
- George Washington University
|
Integration of Comprehensive Cancer Mutation and Expression-Associated Data for Biomarker Evaluation and Discovery |
|
U24 |
2017 |
- Fred Prior
- Joel Saltz
- Ashish Sharma
|
- University of Arkansas
- Stony Brook University
- Emory University
|
TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision Medicine |
|
R01 |
2017 |
|
- University of Illinois at Chicago
- Wayne State University
|
Database and Tools for Functional Inference and Mechanistic Insight into Somatic Cancer Mutations |
|
U24 |
2016 |
|
|
A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers |
|
U24 |
2016 |
- Daniel Marcus
- Richard Wahl
|
- Washington University in St. Louis
|
Integrative Imaging Informatics for Cancer Research |
|
U24 |
2016 |
|
- European Molecular Biology Laboratory
|
The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts |
|
U24 |
2016 |
|
|
Informatics Tools for High-Throughput Analysis of Cancer Mutations |
|
R21 |
2016 |
|
|
Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy |
|
R21 |
2016 |
- Lydia Kavraki
- Gregory Lizee
|
|
Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy |
|
R21 |
2016 |
- Dongjun Chung
- Linda Kelemen
|
- Medical University of South Carolina
|
Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes |
|
U24 |
2016 |
- Hua Xu
- Jeremy Warner
- Ping Yang
|
- University of Texas Health Sci. Center, Houston
- Vanderbilt University
- Mayo Clinic - Jacksonville, Florida
|
Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics |
|
U01 |
2016 |
|
- Washington University in St. Louis
|
Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer |
|
U24 |
2016 |
|
- University of California, San Diego
|
The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research |
|
U01 |
2016 |
- Srinivas Chakra Chennubhotla
- Daryl Sarachan
- Lansing Taylor
|
|
Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images |
|
U24 |
2016 |
- Gabor Marth
- Aaron Quinlan
|
|
Monitoring Tumor Subclonal Heterogeneity Over Time and Space |
|
U01 |
2016 |
|
- University of California, Los Angeles
|
Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq |
|
U24 |
2016 |
|
- University of Texas MD Anderson Cancer Center
|
The Cancer Proteome Atlas, TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data |
|
U01 |
2015 |
|
|
Open Source Diffusion MRI Technology for Brain Cancer Research |
|
U01 |
2015 |
|
|
Informatics Links between Histological Features and Genetics in Cancer |
|
U01 |
2015 |
- Michael Wigler
- Alexander Krasnitz
|
- Cold Spring Harbor Laboratory
|
Computational Framework for Single-Cell Genomics of Tumors |
|
U24 |
2015 |
- Anant Madabhushi
- Metin Nafi Gurcan
- Anne Martel
|
- Case Western Reserve University
- Ohio State University
- University of Toronto
|
Pathology Image Informatics Platform for Visualization, Analysis and Management |
|
U24 |
2015 |
|
|
Extensible Open-Source Zero-Footprint Web Viewer for Oncologic Imaging Research |
|
U24 |
2015 |
- Christos Davatzikos
- Despina Kontos
|
- University of Pennsylvania
|
Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer |
|
U24 |
2015 |
- John Weinstein
- Bradley Broom
|
- University of Texas MD Anderson Cancer Center
|
Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data |
|
U24 |
2015 |
- David Andrew Gutman
- Lee Cooper
|
|
Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer |
|
U24 |
2015 |
|
- University of California, San Diego
|
GenePattern Notebooks for Cancer Research |
|
U24 |
2015 |
- John Quackenbush
- Hugo Aerts
|
- Dana-Farber Cancer Institute
|
Quantitative Radiomics System Decoding the Tumor Phenotype |
|
R01 |
2014 |
- Laura Rozek
- Maureen Sartor
|
|
Integrative Epigenomic/Genomic Profiling and Biomarker Discovery in HPV+ and HPV- |
|
U01 |
2014 |
|
- Mayo Clinic - Rochester, Minnesota
|
caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements |
|
U01 |
2014 |
|
- University of Massachusetts Medical School
|
EMR Adverse Drug Event Detection for Pharmacovigilance |
|
U01 |
2014 |
|
- University of South Alabama
|
OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer |
|
U01 |
2014 |
|
- Cedars-Sinai Medical Center
|
Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets |
|
U01 |
2014 |
- Bobbie-Jo Mary Webb-Robertson
|
- Pacific Northwest National Laboratory
|
Interactive Informatics Resource for Research-driven Cancer Proteomics |
|
U24 |
2014 |
- Bruce Rosen
- Jayashree Kalpathy-Cramer
|
- Massachusetts General Hospital
|
Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery |
|
U24 |
2014 |
|
|
Tools to Analyze Morphology and Spatially Mapped Molecular Data |
|
U24 |
2014 |
|
- Roswell Park Cancer Institute
|
Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor |
|
U24 |
2014 |
|
- Boston Children's Hospital
- University of Pittsburgh
|
Cancer Deep Phenotyping Extraction from Electronic Medical Records |
|
U24 |
2014 |
|
- University of California, San Diego
|
NDEx - the Network Data Exchange, A Network Commons for Biologists |
|
U24 |
2013 |
|
|
Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research |
|
U24 |
2013 |
|
- University of California, Santa Cruz
|
Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser |
|
U24 |
2013 |
|
|
Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer |
|
R01 |
2013 |
|
- University of California, Santa Cruz
|
ESCE: Discovering Molecular Processes |
|
U24 |
2013 |
- Ron Kikinis
- Andrey Fedorov
|
- Brigham and Women's Hospital
- Harvard Medical School
|
Quantitative Image Informatics for Cancer Research (QIICR) |
|
R01 |
2013 |
|
- Massachusetts General Hospital
|
Cloud-Computer-Aided Diagnostic Imaging Decision Support System |
|
R01 |
2013 |
|
|
Interpreting Massive Genomic Data Sets via Summarization |
|
U01 |
2013 |
|
- Dana-Farber Cancer Institute
|
Developing Informatics Technologies to Model Cancer |
|
U01 |
2013 |
|
|
Informatics Tools for High-Throughput Analysis of Cancer Mutations |
|
U01 |
2013 |
- Elmer Bernstam
- Funda Meric-Bernstam
|
- University of Texas MD Anderson Cancer Center
- University of Texas Health Sci. Center, Houston
|
Informatics to Enable Routine Personalized Cancer Therapy |
|
U01 |
2011 |
|
- Dana-Farber Cancer Institute
|
MeV: Software for Next Generation Genomic Data Analysis |
|
R01 |
2002 |
|
|
Electronic Access to Mouse Tumor Data |
