Videos

Error message

  • Deprecated function: Optional parameter $checkbox declared before required parameter $input is implicitly treated as a required parameter in include_once() (line 1442 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Optional parameter $key declared before required parameter $is_multi is implicitly treated as a required parameter in require_once() (line 342 of /local/drupal/itcr/includes/module.inc).
  • Deprecated function: Optional parameter $route declared before required parameter $is_multi is implicitly treated as a required parameter in require_once() (line 342 of /local/drupal/itcr/includes/module.inc).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::current() should either be compatible with Iterator::current(): mixed, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::next() should either be compatible with Iterator::next(): void, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::key() should either be compatible with Iterator::key(): mixed, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::valid() should either be compatible with Iterator::valid(): bool, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::rewind() should either be compatible with Iterator::rewind(): void, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
×

ITCR supports a wide range of informatics tools to serve current and emerging needs across the cancer research continuum. Short introductory videos for many of the ITCR Tools are available below. Please see the Cancer Research Issue "Focus on Computer Resources" for more ITCR videos.

Title Category URL
DINC 2.0 -omics https://dinc.kavrakilab.org/help/
SlicerDMRI Imaging http://dmri.slicer.org/videos/
FHIR ShEx Data Standards https://www.youtube.com/watch?v=fIElhAPQcwo
THRIVE Imaging https://www.youtube.com/channel/UCKGNWhw1b8QOGk4DU9xO5TA
The Cancer Imaging Archive (TCIA) Imaging https://vimeo.com/200254396
QIIME2 -omics, Network Biology https://www.youtube.com/watch?v=M2iXewkYHE0
Trinity -omics https://www.youtube.com/watch?v=9ky5NwV45qY
Federated Tumor Segmentation (FeTS) Imaging https://www.youtube.com/watch?v=Xt8GHkhwimI
PDX Finder -omics https://www.youtube.com/watch?v=9-txxwqzGb8
CNVnator/CNVpytor -omics https://www.youtube.com/watch?v=RJMQtrD0SuE
A high-level introduction to QIIME -omics, Network Biology https://www.youtube.com/watch?v=M2iXewkYHE0
What is Globus? Imaging, -omics, Clinical, Data Standards, Network Biology https://vimeo.com/437243813
CaPTk Introductory Video Imaging https://www.youtube.com/watch?v=WrjoJOxq4i8
CIViC -omics, Clinical https://www.youtube.com/watch?v=Vr0BDUKkDeI
The Cancer Proteome Atlas Portal (TCPA) -omics https://www.youtube.com/watch?v=E0hvaYOv-IU
IGV -omics https://www.youtube.com/watch?v=YpNg0hNUuo8
XNAT Imaging https://www.youtube.com/watch?v=ENk589mOkhI
Galaxy P multi-omics -omics http://bit.ly/2X2luxB
XNAT Imaging Informatics Platform Imaging https://www.youtube.com/watch?v=ENk589mOkhI
Electronic Medical Record Search Engine (EMERSE) Clinical https://vimeo.com/301918463
Methylation Integration (Mint) Clinical http://cancerres.aacrjournals.org/content/77/21/e27.figures-only
WebMeV -omics https://www.youtube.com/watch?v=jCMLc-g4Qo0
UCSC Xena -omics https://www.youtube.com/watch?v=m36vtNmxnzI
Text Information Extraction System (TIES) Clinical https://www.youtube.com/watch?v=EzjAo9LJ4tg
ShEx Data Standards https://www.youtube.com/watch?v=fIElhAPQcwo
Pathology Imaging Informatics Platform (PIIP) Imaging https://www.youtube.com/watch?v=K34Gqt1ItYs
RADIOMICS.io Imaging https://www.youtube.com/watch?v=oN-qZx8VjQc
P-Mart -omics https://www.youtube.com/watch?v=1-MEp-VWeP0
LesionTracker Web Image Viewer Imaging https://www.youtube.com/watch?v=gUIPtoSBL-Q
Next Generation Clustered Heat Maps -omics https://www.youtube.com/watch?v=v5G-HKlXI5U
Network Data Exchange (NDEx) Network Biology https://www.youtube.com/watch?v=ymn1HGPEwSA
ivyGlimpse Imaging, -omics https://www.youtube.com/watch?v=4qJaodLEI5o
GenePattern -omics https://www.youtube.com/watch?v=GHDnFecRm5g
3D Slicer Imaging https://www.youtube.com/watch?v=ikK5uDEmihU
cTAKES Clinical https://vimeo.com/620126726?
Cancer-Related Analysis of Variants Toolkit (CRAVAT) -omics https://www.youtube.com/watch?v=CENpOaAwkco
Cistrome -omics https://www.youtube.com/watch?v=gQDYrtDhpVc
Single Cell Genome Viewer (SCGV) -omics https://www.youtube.com/watch?v=blvXRedv9xc
Bioconductor -omics https://www.youtube.com/watch?v=dg6NvmMVQ3I