Trinity

Error message

  • Deprecated function: Optional parameter $checkbox declared before required parameter $input is implicitly treated as a required parameter in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Optional parameter $key declared before required parameter $is_multi is implicitly treated as a required parameter in require_once() (line 342 of /local/drupal/itcr/includes/module.inc).
  • Deprecated function: Optional parameter $route declared before required parameter $is_multi is implicitly treated as a required parameter in require_once() (line 342 of /local/drupal/itcr/includes/module.inc).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::current() should either be compatible with Iterator::current(): mixed, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::next() should either be compatible with Iterator::next(): void, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::key() should either be compatible with Iterator::key(): mixed, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::valid() should either be compatible with Iterator::valid(): bool, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
  • Deprecated function: Return type of crumbs_PluginSystem_PluginMethodIterator::rewind() should either be compatible with Iterator::rewind(): void, or the #[\ReturnTypeWillChange] attribute should be used to temporarily suppress the notice in require_once() (line 4 of /local/drupal/itcr/sites/all/modules/crumbs/lib/PluginSystem/PluginMethodIterator.php).
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Description: 

Trinity Cancer Transcriptome Analysis Toolkit (CTAT) including de novo transcriptome assembly with downstream support for expression analysis and focused analyses on cancer transcriptomes, incorporating mutation and fusion transcript discovery, and single cell analysis.

Tool URL: 

https://github.com/trinityrnaseq/trinityrnaseq/wiki