QIIME2
Trinity
PDX Finder
CNVnator/CNVpytor
A high-level introduction to QIIME
What is Globus?
CIViC
The Cancer Proteome Atlas Portal (TCPA)
IGV
The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.