New joint publication between the ITCR Galaxy-P and Cravat teams, catalyzed by the interactions through the ITCR program!

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  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
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  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 3542 of /local/drupal/itcr/includes/bootstrap.inc).
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The Galaxy-P team (University of Minnesota, PI Tim Griffin) and the Cravat team (Johns Hopkins University, PI Rachel Karchin) have developed an automated workflow within the Galaxy for Proteomics (Galaxy-P) platform, which leverages the Cancer-Related Analysis of Variants Toolkit (CRAVAT) and makes it interoperable with proteogenomic results. Protein sequence variants confirmed by proteogenomics are assessed for potential structure–function effects as well as associations with cancer using CRAVAT’s rich suite of functionalities, including visualization of results directly within the Galaxy user interface.

The paper can be accessed here: https://pubs.acs.org/doi/10.1021/acs.jproteome.8b00404

Publish Date:  Friday, October 19, 2018