DeepPhe New Release: A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records

ITCR funded Cancer Deep Phenotype Extraction (DeepPhe) tool version 0.3.0 is now available! The tool extracts deep phenotypic information from the clinical narrative at the document-, episode-, and patient-level. The final output is FHIR compliant patient-level phenotypic summary which can be consumed by research warehouses or the DeepPhe native visualization tool. ITCR PI Dr. Guergana Savova, Boston Children's Hospital and Harvard Medical School.

New Items:

  • Identification of multiple cancers for a patient
  • Simpler interface
  • Increased speed
  • Improved machine learning modules
  • Improved rule-based methods
  • Improved ontology
  • Enhanced Visualization tool
  • Smaller disk footprint

Visit the release page to download.


Publish Date:  Tuesday, May 14, 2019