DeepPhe New Release: A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records

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  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
  • Deprecated function: Array and string offset access syntax with curly braces is deprecated in include_once() (line 1439 of /local/drupal/itcr/includes/bootstrap.inc).
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ITCR funded Cancer Deep Phenotype Extraction (DeepPhe) tool version 0.3.0 is now available! The tool extracts deep phenotypic information from the clinical narrative at the document-, episode-, and patient-level. The final output is FHIR compliant patient-level phenotypic summary which can be consumed by research warehouses or the DeepPhe native visualization tool. ITCR PI Dr. Guergana Savova, Boston Children's Hospital and Harvard Medical School.

New Items:

  • Identification of multiple cancers for a patient
  • Simpler interface
  • Increased speed
  • Improved machine learning modules
  • Improved rule-based methods
  • Improved ontology
  • Enhanced Visualization tool
  • Smaller disk footprint

Visit the release page to download.

 

Publish Date:  Tuesday, May 14, 2019